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| Group A |
Oct 25 • 17:30 | Zenit St. Petersburg |  | - |  | AZ Alkmaar | 1 | : | 1 |
| Group B |
Oct 25 • 18:00 | Panathinaikos FC |  | - |  | Aberdeen FC | 3 | : | 0 |
| Group H |
Oct 25 • 18:00 | Helsingborgs IF |  | - |  | Panionios FC | 1 | : | 1 |
| Group B |
Oct 25 • 18:45 | Lokomotiv Moscow |  | - |  | Atlético Madrid | 3 | : | 3 |
| Group E |
Oct 25 • 18:45 | Sparta Prague |  | - |  | FC Zürich | 1 | : | 2 |
| Group D |
Oct 25 • 19:00 | SK Brann |  | - |  | Hamburger SV | 0 | : | 1 |
| Group E |
Oct 25 • 19:00 | Bayer Leverkusen |  | - |  | Toulouse FC | 1 | : | 0 |
| Group H |
Oct 25 • 19:00 | Girondins Bordeaux |  | - |  | Galatasaray SK | 2 | : | 1 |
| Group C |
Oct 25 • 20:00 | IF Elfsborg |  | - |  | AEK Athens | 1 | : | 1 |
| Group C |
Oct 25 • 20:45 | Villarreal CF |  | - |  | ACF Fiorentina | 1 | : | 1 |
| Group D |
Oct 25 • 20:45 | FC Basel |  | - |  | Stade Rennes | 1 | : | 0 |
| Group G |
Oct 25 • 20:45 | Tottenham Hotspur |  | - |  | Getafe CF | 1 | : | 2 |
| Group G |
Oct 25 • 20:45 | RSC Anderlecht |  | - |  | Hapoel Tel Aviv | 2 | : | 0 |
| Group A |
Oct 25 • 21:00 | Everton FC |  | - |  | AE Larissa | 3 | : | 1 |
| Group F |
Oct 25 • 21:00 | Bolton Wanderers |  | - |  | Sporting Braga | 1 | : | 1 |
| Group F |
Oct 25 • 21:15 | FK Crvena zvezda |  | - |  | Bayern Munich | 2 | : | 3 |
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| Group A |
Nov 08 • 16:30 | AE Larissa | | - | | Zenit St. Petersburg | 2 | : | 3 |
| Group E |
Nov 08 • 17:00 | Spartak Moscow |  | - | | Bayer Leverkusen | 2 | : | 1 |
| Group G |
Nov 08 • 17:00 | Hapoel Tel Aviv | | - | | Tottenham Hotspur | 0 | : | 2 |
| Group D |
Nov 08 • 19:00 | Stade Rennes | | - | | SK Brann | 1 | : | 1 |
| Group F |
Nov 08 • 19:00 | Bayern Munich | | - | | Bolton Wanderers | 2 | : | 2 |
| Group H |
Nov 08 • 19:00 | Galatasaray SK | | - | | Helsingborgs IF | 2 | : | 3 |
| Group G |
Nov 08 • 19:15 | Aalborg BK |  | - | | RSC Anderlecht | 1 | : | 1 |
| Group B |
Nov 08 • 20:15 | FC Copenhagen |  | - | | Panathinaikos FC | 0 | : | 1 |
| Group D |
Nov 08 • 20:15 | Dinamo Zagreb |  | - | | FC Basel | 0 | : | 0 |
| Group H |
Nov 08 • 20:15 | Austria Wien |  | - | | Girondins Bordeaux | 1 | : | 2 |
| Group C |
Nov 08 • 20:30 | FK Mladá Boleslav |  | - | | Villarreal CF | 1 | : | 2 |
| Group E |
Nov 08 • 20:30 | Toulouse FC | | - | | Sparta Prague | 2 | : | 3 |
| Group C |
Nov 08 • 20:45 | ACF Fiorentina | | - | | IF Elfsborg | 6 | : | 1 |
| Group F |
Nov 08 • 20:45 | Aris Thessaloniki |  | - | | FK Crvena zvezda | 3 | : | 0 |
| Group B |
Nov 08 • 21:00 | Aberdeen FC | | - | | Lokomotiv Moscow | 1 | : | 1 |
| Group A |
Nov 08 • 21:05 | 1.FC Nuremberg |  | - | | Everton FC | 0 | : | 2 |
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| Group A |
Nov 29 • 17:00 | Zenit St. Petersburg | | - | | 1.FC Nuremberg | 2 | : | 2 |
| Group C |
Nov 29 • 18:15 | IF Elfsborg | | - | | FK Mladá Boleslav | 1 | : | 3 |
| Group B |
Nov 29 • 18:30 | Lokomotiv Moscow | | - | | FC Copenhagen | 0 | : | 1 |
| Group E |
Nov 29 • 18:30 | Sparta Prague | | - | | Spartak Moscow | 0 | : | 0 |
| Group D |
Nov 29 • 19:00 | Hamburger SV | | - | | Stade Rennes | 3 | : | 0 |
| Group C |
Nov 29 • 20:00 | AEK Athens | | - | | ACF Fiorentina | 1 | : | 1 |
| Group H |
Nov 29 • 20:00 | Panionios FC | | - | | Galatasaray SK | 0 | : | 3 |
| Group D |
Nov 29 • 20:15 | SK Brann | | - | | Dinamo Zagreb | 2 | : | 1 |
| Group E |
Nov 29 • 20:15 | FC Zürich | | - | | Toulouse FC | 2 | : | 0 |
| Group H |
Nov 29 • 20:15 | Helsingborgs IF | | - | | Austria Wien | 3 | : | 0 |
| Group A |
Nov 29 • 20:45 | AZ Alkmaar | | - | | AE Larissa | 1 | : | 0 |
| Group B |
Nov 29 • 20:45 | Atlético Madrid | | - | | Aberdeen FC | 2 | : | 0 |
| Group G |
Nov 29 • 20:45 | Getafe CF | | - | | Hapoel Tel Aviv | 1 | : | 2 |
| Group G |
Nov 29 • 20:45 | Tottenham Hotspur | | - | | Aalborg BK | 3 | : | 2 |
| Group F |
Nov 29 • 21:00 | Sporting Braga | | - | | Bayern Munich | 1 | : | 1 |
| Group F |
Nov 29 • 21:00 | Bolton Wanderers | | - | | Aris Thessaloniki | 1 | : | 1 |
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| Group A |
Dec 05 • 20:45 | 1.FC Nuremberg | | - | | AZ Alkmaar | 2 | : | 1 |
| Group A |
Dec 05 • 20:45 | Everton FC | | - | | Zenit St. Petersburg | 1 | : | 0 |
| Group B |
Dec 05 • 20:45 | Panathinaikos FC | | - | | Lokomotiv Moscow | 2 | : | 0 |
| Group B |
Dec 05 • 20:45 | FC Copenhagen | | - | | Atlético Madrid | 0 | : | 2 |
| Group C |
Dec 05 • 20:45 | FK Mladá Boleslav | | - | | AEK Athens | 0 | : | 1 |
| Group C |
Dec 05 • 20:45 | Villarreal CF | | - | | IF Elfsborg | 2 | : | 0 |
| Group D |
Dec 05 • 20:45 | Dinamo Zagreb | | - | | Hamburger SV | 0 | : | 2 |
| Group D |
Dec 05 • 20:45 | FC Basel | | - | | SK Brann | 1 | : | 0 |
| Group E |
Dec 06 • 18:15 | Bayer Leverkusen | | - | | Sparta Prague | 1 | : | 0 |
| Group E |
Dec 06 • 18:15 | Spartak Moscow | | - | | FC Zürich | 1 | : | 0 |
| Group F |
Dec 06 • 20:45 | FK Crvena zvezda | | - | | Bolton Wanderers | 0 | : | 1 |
| Group F |
Dec 06 • 20:45 | Aris Thessaloniki | | - | | Sporting Braga | 1 | : | 1 |
| Group G |
Dec 06 • 20:45 | RSC Anderlecht | | - | | Tottenham Hotspur | 1 | : | 1 |
| Group G |
Dec 06 • 20:45 | Aalborg BK | | - | | Getafe CF | 1 | : | 2 |
| Group H |
Dec 06 • 20:45 | Austria Wien | | - | | Panionios FC | 0 | : | 1 |
| Group H |
Dec 06 • 20:45 | Girondins Bordeaux | | - | | Helsingborgs IF | 2 | : | 1 |
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| Group E |
Dec 19 • 20:45 | Toulouse FC | | - | | Spartak Moscow | 2 | : | 1 |
| Group E |
Dec 19 • 20:45 | FC Zürich | | - | | Bayer Leverkusen | 0 | : | 5 |
| Group F |
Dec 19 • 20:45 | Sporting Braga | | - | | FK Crvena zvezda | 2 | : | 0 |
| Group F |
Dec 19 • 20:45 | Bayern Munich | | - | | Aris Thessaloniki | 6 | : | 0 |
| Group G |
Dec 19 • 20:45 | Getafe CF | | - | | RSC Anderlecht | 2 | : | 1 |
| Group G |
Dec 19 • 20:45 | Hapoel Tel Aviv | | - | | Aalborg BK | 1 | : | 3 |
| Group H |
Dec 19 • 20:45 | Galatasaray SK | | - | | Austria Wien | 0 | : | 0 |
| Group H |
Dec 19 • 20:45 | Panionios FC | | - | | Girondins Bordeaux | 2 | : | 3 |
| Group A |
Dec 20 • 20:45 | AZ Alkmaar | | - | | Everton FC | 2 | : | 3 |
| Group A |
Dec 20 • 20:45 | AE Larissa | | - | | 1.FC Nuremberg | 1 | : | 3 |
| Group B |
Dec 20 • 20:45 | Atlético Madrid | | - | | Panathinaikos FC | 2 | : | 1 |
| Group B |
Dec 20 • 20:45 | Aberdeen FC | | - | | FC Copenhagen | 4 | : | 0 |
| Group C |
Dec 20 • 20:45 | AEK Athens | | - | | Villarreal CF | 1 | : | 2 |
| Group C |
Dec 20 • 20:45 | ACF Fiorentina | | - | | FK Mladá Boleslav | 2 | : | 1 |
| Group D |
Dec 20 • 20:45 | Hamburger SV | | - | | FC Basel | 1 | : | 1 |
| Group D |
Dec 20 • 20:45 | Stade Rennes | | - | | Dinamo Zagreb | 1 | : | 1 |
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| Feb 13 • 18:00 | Zenit St. Petersburg | | - | | Villarreal CF | 1 | : | 0 |
| Feb 13 • 18:45 | Galatasaray SK | | - | | Bayer Leverkusen | 0 | : | 0 |
| Feb 13 • 19:00 | AEK Athens | | - | | Getafe CF | 1 | : | 1 |
| Feb 13 • 20:00 | SK Brann | | - | | Everton FC | 0 | : | 2 |
| Feb 13 • 20:30 | Werder Bremen |  | - | | Sporting Braga | 3 | : | 0 |
| Feb 13 • 20:45 | RSC Anderlecht | | - | | Girondins Bordeaux | 2 | : | 1 |
| Feb 13 • 20:45 | Olympique Marseille |  | - | | Spartak Moscow | 3 | : | 0 |
| Feb 13 • 20:45 | PSV Eindhoven |  | - | | Helsingborgs IF | 2 | : | 0 |
| Feb 13 • 21:00 | Rangers FC |  | - | | Panathinaikos FC | 0 | : | 0 |
| Feb 13 • 21:45 | Sporting CP |  | - | | FC Basel | 2 | : | 0 |
| Feb 14 • 19:00 | Aberdeen FC | | - | | Bayern Munich | 2 | : | 2 |
| Feb 14 • 20:30 | FC Zürich | | - | | Hamburger SV | 1 | : | 3 |
| Feb 14 • 20:45 | Rosenborg BK |  | - | | ACF Fiorentina | 0 | : | 1 |
| Feb 14 • 21:00 | Bolton Wanderers | | - | | Atlético Madrid | 1 | : | 0 |
| Feb 14 • 21:00 | Slavia Prague |  | - | | Tottenham Hotspur | 1 | : | 2 |
| Feb 14 • 21:45 | SL Benfica |  | - | | 1.FC Nuremberg | 1 | : | 0 |
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| Feb 21 • 17:00 | Hamburger SV | | - | | FC Zürich | 0 | : | 0 |
| Feb 21 • 17:00 | Bayer Leverkusen | | - | | Galatasaray SK | 5 | : | 1 |
| Feb 21 • 17:30 | Spartak Moscow | | - | | Olympique Marseille | 2 | : | 0 |
| Feb 21 • 18:00 | Panathinaikos FC | | - | | Rangers FC | 1 | : | 1 |
| Feb 21 • 18:45 | Bayern Munich | | - | | Aberdeen FC | 5 | : | 1 |
| Feb 21 • 20:45 | Atlético Madrid | | - | | Bolton Wanderers | 0 | : | 0 |
| Feb 21 • 20:45 | Villarreal CF | | - | | Zenit St. Petersburg | 2 | : | 1 |
| Feb 21 • 20:45 | Getafe CF | | - | | AEK Athens | 3 | : | 0 |
| Feb 21 • 20:45 | Girondins Bordeaux | | - | | RSC Anderlecht | 1 | : | 1 |
| Feb 21 • 20:45 | ACF Fiorentina | | - | | Rosenborg BK | 2 | : | 1 |
| Feb 21 • 20:45 | Tottenham Hotspur | | - | | Slavia Prague | 1 | : | 1 |
| Feb 21 • 20:45 | Helsingborgs IF | | - | | PSV Eindhoven | 1 | : | 2 |
| Feb 21 • 21:00 | Everton FC | | - | | SK Brann | 6 | : | 1 |
| Feb 21 • 21:00 | FC Basel | | - | | Sporting CP | 0 | : | 3 |
| Feb 21 • 21:00 | 1.FC Nuremberg | | - | | SL Benfica | 2 | : | 2 |
| Feb 21 • 22:30 | Sporting Braga | | - | | Werder Bremen | 0 | : | 1 |
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| Mar 06 • 19:00 | RSC Anderlecht | | - | | Bayern Munich | 0 | : | 5 |
| Mar 06 • 20:45 | ACF Fiorentina | | - | | Everton FC | 2 | : | 0 |
| Mar 06 • 20:45 | Olympique Marseille | | - | | Zenit St. Petersburg | 3 | : | 1 |
| Mar 06 • 21:00 | Rangers FC | | - | | Werder Bremen | 2 | : | 0 |
| Mar 06 • 21:00 | Bolton Wanderers | | - | | Sporting CP | 1 | : | 1 |
| Mar 06 • 21:05 | Bayer Leverkusen | | - | | Hamburger SV | 1 | : | 0 |
| Mar 06 • 21:05 | Tottenham Hotspur | | - | | PSV Eindhoven | 0 | : | 1 |
| Mar 06 • 21:30 | SL Benfica | | - | | Getafe CF | 1 | : | 2 |
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| Mar 12 • 17:30 | Zenit St. Petersburg | | - | | Olympique Marseille | 2 | : | 0 |
| Mar 12 • 17:45 | Hamburger SV | | - | | Bayer Leverkusen | 3 | : | 2 |
| Mar 12 • 20:45 | Bayern Munich | | - | | RSC Anderlecht | 1 | : | 2 |
| Mar 12 • 20:45 | Everton FC | | - | | ACF Fiorentina | 4 | : | 4 |
| Mar 12 • 20:45 | PSV Eindhoven | | - | | Tottenham Hotspur | 6 | : | 6 |
| Mar 12 • 21:00 | Getafe CF | | - | | SL Benfica | 1 | : | 0 |
| Mar 13 • 20:30 | Werder Bremen | | - | | Rangers FC | 1 | : | 0 |
| Mar 13 • 21:45 | Sporting CP | | - | | Bolton Wanderers | 1 | : | 0 |
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| Apr 03 • 18:30 | Bayer Leverkusen | | - | | Zenit St. Petersburg | 1 | : | 4 |
| Apr 03 • 20:45 | Rangers FC | | - | | Sporting CP | 0 | : | 0 |
| Apr 03 • 20:45 | Bayern Munich | | - | | Getafe CF | 1 | : | 1 |
| Apr 03 • 20:45 | ACF Fiorentina | | - | | PSV Eindhoven | 1 | : | 1 |
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| Apr 10 • 18:30 | Zenit St. Petersburg | | - | | Bayer Leverkusen | 0 | : | 1 |
| Apr 10 • 20:45 | Sporting CP | | - | | Rangers FC | 0 | : | 2 |
| Apr 10 • 20:45 | Getafe CF | | - | | Bayern Munich | 3 | : | 3 |
| Apr 10 • 20:45 | PSV Eindhoven | | - | | ACF Fiorentina | 0 | : | 2 |
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| Apr 24 • 20:45 | Bayern Munich | | - | | Zenit St. Petersburg | 1 | : | 1 |
| Apr 24 • 20:45 | Rangers FC | | - | | ACF Fiorentina | 0 | : | 0 |
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| May 01 • 18:30 | Zenit St. Petersburg | | - | | Bayern Munich | 4 | : | 0 |
| May 01 • 20:45 | ACF Fiorentina | | - | | Rangers FC | 2 | : | 4 |
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| May 14 • 20:45 | Zenit St. Petersburg | | - | | Rangers FC | 2 | : | 0 |
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